hidden markov model file of pp2 (pf14299) Search Results


hidden markov model file of pp2 (pf14299)  (InterPro Inc)
90
InterPro Inc hidden markov model file of pp2 (pf14299)
Phylogenetic analysis was performed on 163 predicted <t>PP2</t> protein sequences from eight plant species. Each subfamily represented a distinct color. The prefixes Phe, Ola, Rgu, Rdi, Bam, Gan, At, and Osa were used to identify PP2 proteins from P. edulis , O. latifolia , R. guianensis , R. distichophylla , B. amplexicaulis , G. angustifolia , A. thaliana , and O. sativa , respectively. RAxML-NG on ACCESS (1.2.0) in CIPRES ( https://www.phylo.org/ ) was used to construct a maximum likelihood (ML) phylogenetic tree. Furthermore, TBtools v2.110 was used for visualization
Hidden Markov Model File Of Pp2 (Pf14299), supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Phylogenetic analysis was performed on 163 predicted PP2 protein sequences from eight plant species. Each subfamily represented a distinct color. The prefixes Phe, Ola, Rgu, Rdi, Bam, Gan, At, and Osa were used to identify PP2 proteins from P. edulis , O. latifolia , R. guianensis , R. distichophylla , B. amplexicaulis , G. angustifolia , A. thaliana , and O. sativa , respectively. RAxML-NG on ACCESS (1.2.0) in CIPRES ( https://www.phylo.org/ ) was used to construct a maximum likelihood (ML) phylogenetic tree. Furthermore, TBtools v2.110 was used for visualization

Journal: BMC Genomics

Article Title: PP2 gene family in Phyllostachys edulis : identification, characterization, and expression profiles

doi: 10.1186/s12864-024-11007-5

Figure Lengend Snippet: Phylogenetic analysis was performed on 163 predicted PP2 protein sequences from eight plant species. Each subfamily represented a distinct color. The prefixes Phe, Ola, Rgu, Rdi, Bam, Gan, At, and Osa were used to identify PP2 proteins from P. edulis , O. latifolia , R. guianensis , R. distichophylla , B. amplexicaulis , G. angustifolia , A. thaliana , and O. sativa , respectively. RAxML-NG on ACCESS (1.2.0) in CIPRES ( https://www.phylo.org/ ) was used to construct a maximum likelihood (ML) phylogenetic tree. Furthermore, TBtools v2.110 was used for visualization

Article Snippet: A hidden Markov model file of PP2 (PF14299) was obtained from the InterPro website ( https://www.ebi.ac.uk/interpro/ ).

Techniques: Construct